SNP Information
| SNP |
Name |
Pav_sc0007535.1_3400Y |
| REF |
C |
| ALT |
T |
| Chromosome |
Name |
PAV_r1.0chr6 |
| Position |
13297315 |
| PAV_r1.0 |
Name |
Pav_sc0007535.1 |
| Position |
3400 |
| SSR |
motif |
|
| Gene |
Name |
|
| Annotation |
|
| snpEff |
Effect |
intergenic_region |
| Impact |
MODIFIER |
| Codon |
n.3400C>T |
| Amino Acid |
|
| PCR |
Forward primer |
ATTCTGGGAGGCGTACACTG |
| Reverse primer |
ATTGCTTGGGAGGTTTGATG |
| Product size |
346 |
| Enzymes for CAPS |
|
| Exp. fragment size (REF) |
|
| Exp. fragment size (ALT) |
|
| References |
|
Germplasm List
| Benikirari |
REF/REF |
| Benisayaka |
REF/REF |
| Benishuho |
REF/REF |
| Benitemari |
REF/ALT |
| Beniyutaka |
REF/REF |
| Nanyo |
REF/ALT |
| Satonishiki |
REF/ALT |