| SNP | Name | Pav_sc0006660.1_3340R |
|---|---|---|
| REF | A | |
| ALT | G | |
| Chromosome | Name | PAV_r1.0chr6 |
| Position | 14456712 | |
| PAV_r1.0 | Name | Pav_sc0006660.1 |
| Position | 3340 | |
| SSR | motif | |
| Gene | Name | Pav_sc0006660.1_g020.1.mk |
| Annotation | PREDICTED: probable 1-deoxy-D-xylulose-5-phosphate synthase 2, chloroplastic isoform X2 | |
| snpEff | Effect | 3_prime_UTR_variant |
| Impact | MODIFIER | |
| Codon | c.*220T>C | |
| Amino Acid | ||
| PCR | Forward primer | TTTGTCCATGCGATTGTGTT |
| Reverse primer | TGGGGTGCTCATGTATTGAA | |
| Product size | 346 | |
| Enzymes for CAPS | ||
| Exp. fragment size (REF) | ||
| Exp. fragment size (ALT) | ||
| References | ||
| Benikirari | REF/ALT |
|---|---|
| Benisayaka | ALT/ALT |
| Benishuho | REF/ALT |
| Benitemari | ALT/ALT |
| Beniyutaka | ALT/ALT |
| Nanyo | REF/ALT |
| Satonishiki | REF/ALT |