SNP Information
SNP |
Name |
Pav_sc0004605.1_18034Y |
REF |
C |
ALT |
T |
Chromosome |
Name |
PAV_r1.0chr5 |
Position |
7429968 |
PAV_r1.0 |
Name |
Pav_sc0004605.1 |
Position |
18034 |
SSR |
motif |
|
Gene |
Name |
|
Annotation |
|
snpEff |
Effect |
intergenic_region |
Impact |
MODIFIER |
Codon |
n.18034C>T |
Amino Acid |
|
PCR |
Forward primer |
TGTCACAGATTAAACACGAGCA |
Reverse primer |
ATTTTGCCAATGGAAACAGC |
Product size |
321 |
Enzymes for CAPS |
HaeIII |
Exp. fragment size (REF) |
70,21,230 |
Exp. fragment size (ALT) |
70,251 |
References |
|
Germplasm List
Benikirari |
ALT/ALT |
Benisayaka |
REF/ALT |
Benishuho |
REF/ALT |
Benitemari |
REF/ALT |
Beniyutaka |
ALT/ALT |
Nanyo |
ALT/ALT |
Satonishiki |
REF/ALT |