SNP Information
| SNP |
Name |
Pav_sc0004605.1_18034Y |
| REF |
C |
| ALT |
T |
| Chromosome |
Name |
PAV_r1.0chr5 |
| Position |
7429968 |
| PAV_r1.0 |
Name |
Pav_sc0004605.1 |
| Position |
18034 |
| SSR |
motif |
|
| Gene |
Name |
|
| Annotation |
|
| snpEff |
Effect |
intergenic_region |
| Impact |
MODIFIER |
| Codon |
n.18034C>T |
| Amino Acid |
|
| PCR |
Forward primer |
TGTCACAGATTAAACACGAGCA |
| Reverse primer |
ATTTTGCCAATGGAAACAGC |
| Product size |
321 |
| Enzymes for CAPS |
HaeIII |
| Exp. fragment size (REF) |
70,21,230 |
| Exp. fragment size (ALT) |
70,251 |
| References |
|
Germplasm List
| Benikirari |
ALT/ALT |
| Benisayaka |
REF/ALT |
| Benishuho |
REF/ALT |
| Benitemari |
REF/ALT |
| Beniyutaka |
ALT/ALT |
| Nanyo |
ALT/ALT |
| Satonishiki |
REF/ALT |