SNP Information
| SNP |
Name |
Pav_sc0003521.1_5047K |
| REF |
T |
| ALT |
G |
| Chromosome |
Name |
PAV_r1.0chr0 |
| Position |
65916205 |
| PAV_r1.0 |
Name |
Pav_sc0003521.1 |
| Position |
5047 |
| SSR |
motif |
|
| Gene |
Name |
|
| Annotation |
|
| snpEff |
Effect |
intergenic_region |
| Impact |
MODIFIER |
| Codon |
n.5047T>G |
| Amino Acid |
|
| PCR |
Forward primer |
AGAACGTTGTTGGGGATCAG |
| Reverse primer |
GCAAAACAGAAGCAAAAGGC |
| Product size |
350 |
| Enzymes for CAPS |
|
| Exp. fragment size (REF) |
|
| Exp. fragment size (ALT) |
|
| References |
|
Germplasm List
| Benikirari |
ALT/ALT |
| Benisayaka |
REF/ALT |
| Benishuho |
-/- |
| Benitemari |
REF/ALT |
| Beniyutaka |
REF/ALT |
| Nanyo |
ALT/ALT |
| Satonishiki |
REF/ALT |