SNP Information
| SNP |
Name |
Pav_sc0002817.1_44349M |
| REF |
A |
| ALT |
C |
| Chromosome |
Name |
PAV_r1.0chr2 |
| Position |
5265382 |
| PAV_r1.0 |
Name |
Pav_sc0002817.1 |
| Position |
44349 |
| SSR |
motif |
|
| Gene |
Name |
|
| Annotation |
|
| snpEff |
Effect |
intergenic_region |
| Impact |
MODIFIER |
| Codon |
n.44349A>C |
| Amino Acid |
|
| PCR |
Forward primer |
ACCATCGTTCCATTGCTTTC |
| Reverse primer |
ACCTGAATTCTGAACCACGG |
| Product size |
316 |
| Enzymes for CAPS |
|
| Exp. fragment size (REF) |
|
| Exp. fragment size (ALT) |
|
| References |
|
Germplasm List
| Benikirari |
ALT/ALT |
| Benisayaka |
REF/REF |
| Benishuho |
ALT/ALT |
| Benitemari |
REF/ALT |
| Beniyutaka |
ALT/ALT |
| Nanyo |
-/- |
| Satonishiki |
REF/ALT |