| SNP | Name | Pav_sc0002476.1_1670R |
|---|---|---|
| REF | A | |
| ALT | G | |
| Chromosome | Name | PAV_r1.0chr6 |
| Position | 13077848 | |
| PAV_r1.0 | Name | Pav_sc0002476.1 |
| Position | 1670 | |
| SSR | motif | |
| Gene | Name | Pav_sc0002476.1_g010.1.mk |
| Annotation | PREDICTED: 2-isopropylmalate synthase 1, chloroplastic-like isoform X2 | |
| snpEff | Effect | intron_variant |
| Impact | MODIFIER | |
| Codon | c.-6-174A>G | |
| Amino Acid | ||
| PCR | Forward primer | GAGTTTCTCAACCATTTGGTCA |
| Reverse primer | CCCCACGACAATCTAAGGTC | |
| Product size | 307 | |
| Enzymes for CAPS | ||
| Exp. fragment size (REF) | ||
| Exp. fragment size (ALT) | ||
| References | ||
| Benikirari | REF/ALT |
|---|---|
| Benisayaka | REF/REF |
| Benishuho | REF/REF |
| Benitemari | REF/REF |
| Beniyutaka | ALT/ALT |
| Nanyo | REF/REF |
| Satonishiki | REF/REF |