SNP Information
SNP |
Name |
Pav_sc0002106.1_12597W |
REF |
T |
ALT |
A |
Chromosome |
Name |
PAV_r1.0chr1 |
Position |
7626414 |
PAV_r1.0 |
Name |
Pav_sc0002106.1 |
Position |
12597 |
SSR |
motif |
|
Gene |
Name |
|
Annotation |
|
snpEff |
Effect |
intergenic_region |
Impact |
MODIFIER |
Codon |
n.12597T>A |
Amino Acid |
|
PCR |
Forward primer |
CAATGATAGGTGGGATTGGG |
Reverse primer |
CAGAATCGAACTGTAGCAGCA |
Product size |
340 |
Enzymes for CAPS |
AluI |
Exp. fragment size (REF) |
200,4,78,58 |
Exp. fragment size (ALT) |
200,4,65,13,58 |
References |
|
Germplasm List
Benikirari |
REF/ALT |
Benisayaka |
REF/ALT |
Benishuho |
REF/REF |
Benitemari |
REF/REF |
Beniyutaka |
REF/ALT |
Nanyo |
REF/REF |
Satonishiki |
REF/ALT |