| SNP | Name | Pav_sc0001953.1_17485R |
|---|---|---|
| REF | G | |
| ALT | A | |
| Chromosome | Name | PAV_r1.0chr4 |
| Position | 7865582 | |
| PAV_r1.0 | Name | Pav_sc0001953.1 |
| Position | 17485 | |
| SSR | motif | |
| Gene | Name | Pav_sc0001953.1_g030.1.mk |
| Annotation | PREDICTED: chaperonin 60 subunit alpha 2, chloroplastic isoform X2 | |
| snpEff | Effect | missense_variant |
| Impact | MODERATE | |
| Codon | c.538G>A | |
| Amino Acid | p.Val180Ile | |
| PCR | Forward primer | TGGAACTTGAAGATCGCAAA |
| Reverse primer | CCTACAAGGCACAACCGAAT | |
| Product size | 317 | |
| Enzymes for CAPS | AfaI | |
| Exp. fragment size (REF) | 100,217 | |
| Exp. fragment size (ALT) | 317 | |
| References | ||
| Benikirari | REF/REF |
|---|---|
| Benisayaka | ALT/ALT |
| Benishuho | REF/ALT |
| Benitemari | REF/REF |
| Beniyutaka | REF/ALT |
| Nanyo | REF/ALT |
| Satonishiki | REF/ALT |