| SNP | Name | Pav_sc0001953.1_13584K |
|---|---|---|
| REF | G | |
| ALT | T | |
| Chromosome | Name | PAV_r1.0chr4 |
| Position | 7869483 | |
| PAV_r1.0 | Name | Pav_sc0001953.1 |
| Position | 13584 | |
| SSR | motif | |
| Gene | Name | Pav_sc0001953.1_g030.1.mk |
| Annotation | PREDICTED: chaperonin 60 subunit alpha 2, chloroplastic isoform X2 | |
| snpEff | Effect | 5_prime_UTR_variant |
| Impact | MODIFIER | |
| Codon | c.-769G>T | |
| Amino Acid | ||
| PCR | Forward primer | AACCTTGTTCAGCCAGCAAT |
| Reverse primer | GTAAGGCCTCCCTGCTTTCT | |
| Product size | 294 | |
| Enzymes for CAPS | MboI | |
| Exp. fragment size (REF) | 294 | |
| Exp. fragment size (ALT) | 172,122 | |
| References | ||
| Benikirari | REF/REF |
|---|---|
| Benisayaka | ALT/ALT |
| Benishuho | REF/ALT |
| Benitemari | REF/REF |
| Beniyutaka | REF/ALT |
| Nanyo | REF/ALT |
| Satonishiki | REF/ALT |