SNP Information
SNP |
Name |
Pav_sc0001475.1_130471R |
REF |
G |
ALT |
A |
Chromosome |
Name |
PAV_r1.0chr1 |
Position |
31500633 |
PAV_r1.0 |
Name |
Pav_sc0001475.1 |
Position |
130471 |
SSR |
motif |
|
Gene |
Name |
|
Annotation |
|
snpEff |
Effect |
intergenic_region |
Impact |
MODIFIER |
Codon |
n.130471G>A |
Amino Acid |
|
PCR |
Forward primer |
CCTGCAAGTTTGGTCCAGAT |
Reverse primer |
CATGTTGTCCCAAGCATGAC |
Product size |
294 |
Enzymes for CAPS |
MspI |
Exp. fragment size (REF) |
100,104,90 |
Exp. fragment size (ALT) |
204,90 |
References |
|
Germplasm List
Benikirari |
REF/ALT |
Benisayaka |
REF/REF |
Benishuho |
REF/ALT |
Benitemari |
REF/ALT |
Beniyutaka |
REF/REF |
Nanyo |
REF/ALT |
Satonishiki |
REF/REF |