SNP Information
SNP |
Name |
Pav_sc0001472.1_38539Y |
REF |
C |
ALT |
T |
Chromosome |
Name |
PAV_r1.0chr6 |
Position |
24531603 |
PAV_r1.0 |
Name |
Pav_sc0001472.1 |
Position |
38539 |
SSR |
motif |
|
Gene |
Name |
|
Annotation |
|
snpEff |
Effect |
intergenic_region |
Impact |
MODIFIER |
Codon |
n.38539C>T |
Amino Acid |
|
PCR |
Forward primer |
GGAGTTGGTGTTGGAGGAGA |
Reverse primer |
ATCGTTGCAGAGGAGGAAGA |
Product size |
324 |
Enzymes for CAPS |
|
Exp. fragment size (REF) |
|
Exp. fragment size (ALT) |
|
References |
|
Germplasm List
Benikirari |
REF/ALT |
Benisayaka |
ALT/ALT |
Benishuho |
ALT/ALT |
Benitemari |
REF/ALT |
Beniyutaka |
REF/ALT |
Nanyo |
REF/ALT |
Satonishiki |
REF/ALT |