| SNP | Name | Pav_sc0001422.1_220064S |
|---|---|---|
| REF | C | |
| ALT | G | |
| Chromosome | Name | PAV_r1.0chr8 |
| Position | 12366456 | |
| PAV_r1.0 | Name | Pav_sc0001422.1 |
| Position | 220064 | |
| SSR | motif | |
| Gene | Name | Pav_sc0001422.1_g420.1.mk |
| Annotation | PREDICTED: prolyl 4-hydroxylase subunit alpha-1 | |
| snpEff | Effect | 5_prime_UTR_variant |
| Impact | MODIFIER | |
| Codon | c.-106C>G | |
| Amino Acid | ||
| PCR | Forward primer | AAAAACAAAATTGGTCATTTTCC |
| Reverse primer | TTGCTTTCACTTTCATTGCG | |
| Product size | 282 | |
| Enzymes for CAPS | HaeIII | |
| Exp. fragment size (REF) | 282 | |
| Exp. fragment size (ALT) | 161,121 | |
| References | ||
| Benikirari | REF/ALT |
|---|---|
| Benisayaka | REF/ALT |
| Benishuho | REF/ALT |
| Benitemari | REF/ALT |
| Beniyutaka | REF/ALT |
| Nanyo | ALT/ALT |
| Satonishiki | REF/ALT |