SNP Information
    
      
      
        
            
              | SNP | 
              Name | 
              Pav_sc0001345.1_79843W | 
            
	
            
              | REF | 
              A | 
            
	
            
              | ALT | 
              T | 
	    
	
            
	      | Chromosome | 
	      Name | 
	      PAV_r1.0chr3 | 
	    
	
            
	      | Position | 
	      13763398 | 
	    
	
            
	      | PAV_r1.0 | 
	      Name | 
	      Pav_sc0001345.1 | 
	    
	
            
	      | Position | 
	      79843 | 
	    
	
            
	      | SSR | 
	      motif | 
	       | 
	    
	
            
	      | Gene | 
	      Name | 
	       | 
	    
	
            
	      | Annotation | 
	       | 
	    
	
            
	      | snpEff | 
	      Effect | 
	      intergenic_region | 
	    
	
            
	      | Impact | 
	      MODIFIER | 
	    
	
            
	      | Codon | 
	      n.79843A>T | 
	    
	
            
	      | Amino Acid | 
	       | 
	    
	
            
	      | PCR | 
	      Forward primer | 
	      TTTAGTTGGCATGTTGGCTG | 
	    
	
            
	      | Reverse primer | 
	      ACTGCAATGCTGAGATGGTG | 
	    
	
            
	      | Product size | 
	      322 | 
	    
	
            
	      | Enzymes for CAPS | 
	      DraI | 
	    
	
            
	      | Exp. fragment size (REF) | 
	      322 | 
	    
            
	      | Exp. fragment size (ALT) | 
	      71,251 | 
	    
	
            
	      | References | 
	       | 
	    
	        
        
        Germplasm List
       
         
    
      | Benikirari | 
      REF/REF | 
    
    
      | Benisayaka | 
      REF/ALT | 
    
    
      | Benishuho | 
      REF/REF | 
    
    
      | Benitemari | 
      REF/REF | 
    
    
      | Beniyutaka | 
      REF/REF | 
    
    
      | Nanyo | 
      REF/REF | 
    
    
      | Satonishiki | 
      REF/REF |