SNP Information
SNP |
Name |
Pav_sc0001270.1_179112Y |
REF |
T |
ALT |
C |
Chromosome |
Name |
PAV_r1.0chr4 |
Position |
24834403 |
PAV_r1.0 |
Name |
Pav_sc0001270.1 |
Position |
179112 |
SSR |
motif |
|
Gene |
Name |
|
Annotation |
|
snpEff |
Effect |
intergenic_region |
Impact |
MODIFIER |
Codon |
n.179112T>C |
Amino Acid |
|
PCR |
Forward primer |
TCGGAATCATGAACCGTAAA |
Reverse primer |
GTTGGGAATTTAGACGGCAA |
Product size |
340 |
Enzymes for CAPS |
|
Exp. fragment size (REF) |
|
Exp. fragment size (ALT) |
|
References |
|
Germplasm List
Benikirari |
ALT/ALT |
Benisayaka |
REF/ALT |
Benishuho |
ALT/ALT |
Benitemari |
-/- |
Beniyutaka |
REF/ALT |
Nanyo |
-/- |
Satonishiki |
REF/ALT |