SNP Information
| SNP |
Name |
Pav_sc0001125.1_40350M |
| REF |
C |
| ALT |
A |
| Chromosome |
Name |
PAV_r1.0chr5 |
| Position |
6569399 |
| PAV_r1.0 |
Name |
Pav_sc0001125.1 |
| Position |
40350 |
| SSR |
motif |
|
| Gene |
Name |
|
| Annotation |
|
| snpEff |
Effect |
intergenic_region |
| Impact |
MODIFIER |
| Codon |
n.40350C>A |
| Amino Acid |
|
| PCR |
Forward primer |
ACCAACTCTCTTGCCCTTGA |
| Reverse primer |
ATTAAGGGCCCTCTCTTCCA |
| Product size |
266 |
| Enzymes for CAPS |
|
| Exp. fragment size (REF) |
|
| Exp. fragment size (ALT) |
|
| References |
|
Germplasm List
| Benikirari |
ALT/ALT |
| Benisayaka |
REF/ALT |
| Benishuho |
REF/REF |
| Benitemari |
REF/REF |
| Beniyutaka |
ALT/ALT |
| Nanyo |
REF/ALT |
| Satonishiki |
REF/REF |