| SNP | Name | Pav_sc0001124.1_242586Y |
|---|---|---|
| REF | C | |
| ALT | T | |
| Chromosome | Name | PAV_r1.0chr3 |
| Position | 158227 | |
| PAV_r1.0 | Name | Pav_sc0001124.1 |
| Position | 242586 | |
| SSR | motif | |
| Gene | Name | Pav_sc0001124.1_g350.1.mk |
| Annotation | PREDICTED: probable E3 ubiquitin-protein ligase HERC2 | |
| snpEff | Effect | intron_variant |
| Impact | MODIFIER | |
| Codon | c.2854-170C>T | |
| Amino Acid | ||
| PCR | Forward primer | TGGTGTGCCTCACTCTCTTC |
| Reverse primer | TTGTTTCCCTTCCAGCAGAC | |
| Product size | 344 | |
| Enzymes for CAPS | MspI | |
| Exp. fragment size (REF) | 131,213 | |
| Exp. fragment size (ALT) | 344 | |
| References | ||
| Benikirari | REF/ALT |
|---|---|
| Benisayaka | REF/REF |
| Benishuho | ALT/ALT |
| Benitemari | ALT/ALT |
| Beniyutaka | ALT/ALT |
| Nanyo | REF/ALT |
| Satonishiki | REF/ALT |