SNP Information
SNP |
Name |
Pav_sc0001102.1_549928M |
REF |
A |
ALT |
C |
Chromosome |
Name |
PAV_r1.0chr2 |
Position |
22805493 |
PAV_r1.0 |
Name |
Pav_sc0001102.1 |
Position |
549928 |
SSR |
motif |
|
Gene |
Name |
|
Annotation |
|
snpEff |
Effect |
intergenic_region |
Impact |
MODIFIER |
Codon |
n.549928A>C |
Amino Acid |
|
PCR |
Forward primer |
TTAAACGGTATAGCCGCCC |
Reverse primer |
TTATTGCCCCAAAAATGGAA |
Product size |
227 |
Enzymes for CAPS |
DraI |
Exp. fragment size (REF) |
2,30,18,54,19,104 |
Exp. fragment size (ALT) |
2,30,18,54,123 |
References |
|
Germplasm List
Benikirari |
REF/REF |
Benisayaka |
REF/ALT |
Benishuho |
REF/REF |
Benitemari |
REF/REF |
Beniyutaka |
REF/REF |
Nanyo |
REF/REF |
Satonishiki |
REF/REF |