SNP Information
| SNP |
Name |
Pav_sc0001080.1_652265Y |
| REF |
C |
| ALT |
T |
| Chromosome |
Name |
PAV_r1.0chr3 |
| Position |
21751617 |
| PAV_r1.0 |
Name |
Pav_sc0001080.1 |
| Position |
652265 |
| SSR |
motif |
|
| Gene |
Name |
|
| Annotation |
|
| snpEff |
Effect |
intergenic_region |
| Impact |
MODIFIER |
| Codon |
n.652265C>T |
| Amino Acid |
|
| PCR |
Forward primer |
AAGGCCTTGTTTGAGCTTGA |
| Reverse primer |
TCTTTCCCTTGTTGTGAGGG |
| Product size |
341 |
| Enzymes for CAPS |
|
| Exp. fragment size (REF) |
|
| Exp. fragment size (ALT) |
|
| References |
|
Germplasm List
| Benikirari |
REF/ALT |
| Benisayaka |
REF/REF |
| Benishuho |
REF/REF |
| Benitemari |
REF/REF |
| Beniyutaka |
ALT/ALT |
| Nanyo |
REF/REF |
| Satonishiki |
REF/REF |