| SNP | Name | Pav_sc0001077.1_212739S |
|---|---|---|
| REF | G | |
| ALT | C | |
| Chromosome | Name | PAV_r1.0chr3 |
| Position | 15663724 | |
| PAV_r1.0 | Name | Pav_sc0001077.1 |
| Position | 212739 | |
| SSR | motif | |
| Gene | Name | Pav_sc0001077.1_g360.1.mk |
| Annotation | PREDICTED: cellulose synthase-like protein H1 isoform X1 | |
| snpEff | Effect | intron_variant |
| Impact | MODIFIER | |
| Codon | c.1663-907G>C | |
| Amino Acid | ||
| PCR | Forward primer | TGGCTCCAACTAGCCTTCAT |
| Reverse primer | AGGCAAGAAGCCAGACAAAA | |
| Product size | 325 | |
| Enzymes for CAPS | HaeIII | |
| Exp. fragment size (REF) | 75,45,205 | |
| Exp. fragment size (ALT) | 120,205 | |
| References | ||
| Benikirari | ALT/ALT |
|---|---|
| Benisayaka | REF/ALT |
| Benishuho | REF/ALT |
| Benitemari | REF/ALT |
| Beniyutaka | REF/ALT |
| Nanyo | REF/ALT |
| Satonishiki | REF/ALT |