| SNP | Name | Pav_sc0000882.1_154839R |
|---|---|---|
| REF | A | |
| ALT | G | |
| Chromosome | Name | PAV_r1.0chr2 |
| Position | 5287159 | |
| PAV_r1.0 | Name | Pav_sc0000882.1 |
| Position | 154839 | |
| SSR | motif | |
| Gene | Name | Pav_sc0000882.1_g300.1.mk |
| Annotation | PREDICTED: polygalacturonase | |
| snpEff | Effect | synonymous_variant |
| Impact | LOW | |
| Codon | c.1395A>G | |
| Amino Acid | p.Thr465Thr | |
| PCR | Forward primer | GTGCTTCAAAAGTGGCAGTG |
| Reverse primer | TGCCATGCTTGGCTTTATTT | |
| Product size | 350 | |
| Enzymes for CAPS | HaeIII | |
| Exp. fragment size (REF) | 350 | |
| Exp. fragment size (ALT) | 102,248 | |
| References | ||
| Benikirari | REF/ALT |
|---|---|
| Benisayaka | REF/ALT |
| Benishuho | REF/ALT |
| Benitemari | REF/ALT |
| Beniyutaka | REF/REF |
| Nanyo | -/- |
| Satonishiki | REF/ALT |