| SNP | Name | Pav_sc0000852.1_541699R |
|---|---|---|
| REF | A | |
| ALT | G | |
| Chromosome | Name | PAV_r1.0chr1 |
| Position | 32243111 | |
| PAV_r1.0 | Name | Pav_sc0000852.1 |
| Position | 541699 | |
| SSR | motif | |
| Gene | Name | Pav_sc0000852.1_g910.1.mk |
| Annotation | PREDICTED: thioredoxin-like 4, chloroplastic | |
| snpEff | Effect | synonymous_variant |
| Impact | LOW | |
| Codon | c.288T>C | |
| Amino Acid | p.Ala96Ala | |
| PCR | Forward primer | CAGCTCCCTTGCACAACTTT |
| Reverse primer | CCTCAATTCCTGGGAGAACA | |
| Product size | 285 | |
| Enzymes for CAPS | HaeIII | |
| Exp. fragment size (REF) | 240,45 | |
| Exp. fragment size (ALT) | 102,138,45 | |
| References | ||
| Benikirari | REF/ALT |
|---|---|
| Benisayaka | REF/ALT |
| Benishuho | REF/ALT |
| Benitemari | ALT/ALT |
| Beniyutaka | REF/REF |
| Nanyo | REF/ALT |
| Satonishiki | REF/ALT |