SNP Information
SNP |
Name |
Pav_sc0000584.1_139678M |
REF |
C |
ALT |
A |
Chromosome |
Name |
PAV_r1.0chr4 |
Position |
12175874 |
PAV_r1.0 |
Name |
Pav_sc0000584.1 |
Position |
139678 |
SSR |
motif |
|
Gene |
Name |
|
Annotation |
|
snpEff |
Effect |
intergenic_region |
Impact |
MODIFIER |
Codon |
n.139678C>A |
Amino Acid |
|
PCR |
Forward primer |
ATCGGTTCAGCATGAAAAGG |
Reverse primer |
ATTTGGTTTTGGGGTTCACA |
Product size |
273 |
Enzymes for CAPS |
EcoRI |
Exp. fragment size (REF) |
173,100 |
Exp. fragment size (ALT) |
273 |
References |
|
Germplasm List
Benikirari |
REF/REF |
Benisayaka |
REF/ALT |
Benishuho |
ALT/ALT |
Benitemari |
REF/ALT |
Beniyutaka |
REF/ALT |
Nanyo |
ALT/ALT |
Satonishiki |
REF/ALT |