| SNP | Name | Pav_sc0000581.1_49071R |
|---|---|---|
| REF | G | |
| ALT | A | |
| Chromosome | Name | PAV_r1.0chr6 |
| Position | 16202417 | |
| PAV_r1.0 | Name | Pav_sc0000581.1 |
| Position | 49071 | |
| SSR | motif | |
| Gene | Name | Pav_sc0000581.1_g060.1.mk |
| Annotation | PREDICTED: CBS domain-containing protein CBSX1, chloroplastic-like isoform X3 | |
| snpEff | Effect | 5_prime_UTR_variant |
| Impact | MODIFIER | |
| Codon | c.-16G>A | |
| Amino Acid | ||
| PCR | Forward primer | ATAACGCAATTTCCACCGTC |
| Reverse primer | GAGATTGAGAAGAGGCGTCG | |
| Product size | 340 | |
| Enzymes for CAPS | HhaI | |
| Exp. fragment size (REF) | 123,37,40,140 | |
| Exp. fragment size (ALT) | 123,37,180 | |
| References | ||
| Benikirari | REF/REF |
|---|---|
| Benisayaka | REF/ALT |
| Benishuho | REF/ALT |
| Benitemari | REF/ALT |
| Beniyutaka | REF/ALT |
| Nanyo | REF/REF |
| Satonishiki | REF/ALT |