| SNP | Name | Pav_sc0000514.1_10245R |
|---|---|---|
| REF | G | |
| ALT | A | |
| Chromosome | Name | PAV_r1.0chr7 |
| Position | 5048654 | |
| PAV_r1.0 | Name | Pav_sc0000514.1 |
| Position | 10245 | |
| SSR | motif | |
| Gene | Name | Pav_sc0000514.1_g020.1.mk |
| Annotation | PREDICTED: magnesium-chelatase subunit ChlH, chloroplastic | |
| snpEff | Effect | synonymous_variant |
| Impact | LOW | |
| Codon | c.312C>T | |
| Amino Acid | p.Ser104Ser | |
| PCR | Forward primer | ATGAAGATGTTGGCGTCCTC |
| Reverse primer | GGCGTATTGTGCCAGAAAAT | |
| Product size | 223 | |
| Enzymes for CAPS | ||
| Exp. fragment size (REF) | ||
| Exp. fragment size (ALT) | ||
| References | ||
| Benikirari | REF/ALT |
|---|---|
| Benisayaka | REF/REF |
| Benishuho | REF/REF |
| Benitemari | REF/REF |
| Beniyutaka | REF/REF |
| Nanyo | REF/REF |
| Satonishiki | REF/REF |