SNP Information
SNP |
Name |
Pav_sc0000426.1_2460M |
REF |
A |
ALT |
C |
Chromosome |
Name |
PAV_r1.0chr8 |
Position |
5485169 |
PAV_r1.0 |
Name |
Pav_sc0000426.1 |
Position |
2460 |
SSR |
motif |
|
Gene |
Name |
|
Annotation |
|
snpEff |
Effect |
intergenic_region |
Impact |
MODIFIER |
Codon |
n.2460A>C |
Amino Acid |
|
PCR |
Forward primer |
AGTTAAGGCAGCAGCAATGG |
Reverse primer |
CACCTGTGCATCCATACCCT |
Product size |
206 |
Enzymes for CAPS |
AluI |
Exp. fragment size (REF) |
110,96 |
Exp. fragment size (ALT) |
75,35,96 |
References |
|
Germplasm List
Benikirari |
ALT/ALT |
Benisayaka |
REF/REF |
Benishuho |
REF/REF |
Benitemari |
REF/REF |
Beniyutaka |
REF/ALT |
Nanyo |
ALT/ALT |
Satonishiki |
REF/REF |