SNP Information
    
      
      
        
            
              | SNP | 
              Name | 
              Pav_sc0000396.1_302654M | 
            
	
            
              | REF | 
              C | 
            
	
            
              | ALT | 
              A | 
	    
	
            
	      | Chromosome | 
	      Name | 
	      PAV_r1.0chr6 | 
	    
	
            
	      | Position | 
	      23495724 | 
	    
	
            
	      | PAV_r1.0 | 
	      Name | 
	      Pav_sc0000396.1 | 
	    
	
            
	      | Position | 
	      302654 | 
	    
	
            
	      | SSR | 
	      motif | 
	       | 
	    
	
            
	      | Gene | 
	      Name | 
	       | 
	    
	
            
	      | Annotation | 
	       | 
	    
	
            
	      | snpEff | 
	      Effect | 
	      intergenic_region | 
	    
	
            
	      | Impact | 
	      MODIFIER | 
	    
	
            
	      | Codon | 
	      n.302654C>A | 
	    
	
            
	      | Amino Acid | 
	       | 
	    
	
            
	      | PCR | 
	      Forward primer | 
	      GGTTGAATTTGAAGGGGGTT | 
	    
	
            
	      | Reverse primer | 
	      AACTTGCAAAAGGAGGCTCA | 
	    
	
            
	      | Product size | 
	      264 | 
	    
	
            
	      | Enzymes for CAPS | 
	      HhaI | 
	    
	
            
	      | Exp. fragment size (REF) | 
	      159,5,100 | 
	    
            
	      | Exp. fragment size (ALT) | 
	      164,100 | 
	    
	
            
	      | References | 
	       | 
	    
	        
        
        Germplasm List
       
         
    
      | Benikirari | 
      REF/REF | 
    
    
      | Benisayaka | 
      REF/REF | 
    
    
      | Benishuho | 
      REF/REF | 
    
    
      | Benitemari | 
      REF/REF | 
    
    
      | Beniyutaka | 
      REF/REF | 
    
    
      | Nanyo | 
      REF/ALT | 
    
    
      | Satonishiki | 
      REF/REF |