SNP Information
SNP |
Name |
Pav_sc0000383.1_581407W |
REF |
T |
ALT |
A |
Chromosome |
Name |
PAV_r1.0chr5 |
Position |
15346050 |
PAV_r1.0 |
Name |
Pav_sc0000383.1 |
Position |
581407 |
SSR |
motif |
|
Gene |
Name |
|
Annotation |
|
snpEff |
Effect |
intergenic_region |
Impact |
MODIFIER |
Codon |
n.581407T>A |
Amino Acid |
|
PCR |
Forward primer |
TGTTTCCTAGGGTTTGGCAG |
Reverse primer |
ACACCTCATTGCCTTTGGAC |
Product size |
217 |
Enzymes for CAPS |
AfaI |
Exp. fragment size (REF) |
217 |
Exp. fragment size (ALT) |
71,146 |
References |
|
Germplasm List
Benikirari |
REF/REF |
Benisayaka |
REF/ALT |
Benishuho |
REF/REF |
Benitemari |
REF/ALT |
Beniyutaka |
REF/REF |
Nanyo |
ALT/ALT |
Satonishiki |
REF/REF |