| SNP | Name | Pav_sc0000383.1_493485S |
|---|---|---|
| REF | C | |
| ALT | G | |
| Chromosome | Name | PAV_r1.0chr5 |
| Position | 15433972 | |
| PAV_r1.0 | Name | Pav_sc0000383.1 |
| Position | 493485 | |
| SSR | motif | |
| Gene | Name | Pav_sc0000383.1_g980.1.mk |
| Annotation | PREDICTED: protein CHUP1, chloroplastic-like | |
| snpEff | Effect | missense_variant |
| Impact | MODERATE | |
| Codon | c.872G>C | |
| Amino Acid | p.Arg291Pro | |
| PCR | Forward primer | GAGGAGCTGTCAATGGTGGT |
| Reverse primer | GCAGGTTGAGGCATACCAAT | |
| Product size | 271 | |
| Enzymes for CAPS | HhaI | |
| Exp. fragment size (REF) | 179,92 | |
| Exp. fragment size (ALT) | 271 | |
| References | ||
| Benikirari | REF/REF |
|---|---|
| Benisayaka | REF/ALT |
| Benishuho | REF/REF |
| Benitemari | REF/ALT |
| Beniyutaka | REF/REF |
| Nanyo | ALT/ALT |
| Satonishiki | REF/REF |