SNP Information
    
      
      
        
            
              | SNP | Name | Pav_sc0000381.1_91611Y | 
	
            
              | REF | C | 
	
            
              | ALT | T | 
	
            
	      | Chromosome | Name | PAV_r1.0chr1 | 
	
            
	      | Position | 770734 | 
	
            
	      | PAV_r1.0 | Name | Pav_sc0000381.1 | 
	
            
	      | Position | 91611 | 
	
            
	      | SSR | motif |  | 
	
            
	      | Gene | Name |  | 
	
            
	      | Annotation |  | 
	
            
	      | snpEff | Effect | intergenic_region | 
	
            
	      | Impact | MODIFIER | 
	
            
	      | Codon | n.91611C>T | 
	
            
	      | Amino Acid |  | 
	
            
	      | PCR | Forward primer | TTATTGGGTGGGAGGTGGTA | 
	
            
	      | Reverse primer | ATCCTAGCATTCCCGGTCTT | 
	
            
	      | Product size | 340 | 
	
            
	      | Enzymes for CAPS | AfaI | 
	
            
	      | Exp. fragment size (REF) | 340 | 
            
	      | Exp. fragment size (ALT) | 79,261 | 
	
            
	      | References |  | 
	        
        
        Germplasm List
       
         
    
      | Benikirari | REF/REF | 
    
      | Benisayaka | REF/ALT | 
    
      | Benishuho | REF/ALT | 
    
      | Benitemari | -/- | 
    
      | Beniyutaka | REF/ALT | 
    
      | Nanyo | REF/ALT | 
    
      | Satonishiki | REF/REF |