SNP Information
SNP |
Name |
Pav_sc0000381.1_91611Y |
REF |
C |
ALT |
T |
Chromosome |
Name |
PAV_r1.0chr1 |
Position |
770734 |
PAV_r1.0 |
Name |
Pav_sc0000381.1 |
Position |
91611 |
SSR |
motif |
|
Gene |
Name |
|
Annotation |
|
snpEff |
Effect |
intergenic_region |
Impact |
MODIFIER |
Codon |
n.91611C>T |
Amino Acid |
|
PCR |
Forward primer |
TTATTGGGTGGGAGGTGGTA |
Reverse primer |
ATCCTAGCATTCCCGGTCTT |
Product size |
340 |
Enzymes for CAPS |
AfaI |
Exp. fragment size (REF) |
340 |
Exp. fragment size (ALT) |
79,261 |
References |
|
Germplasm List
Benikirari |
REF/REF |
Benisayaka |
REF/ALT |
Benishuho |
REF/ALT |
Benitemari |
-/- |
Beniyutaka |
REF/ALT |
Nanyo |
REF/ALT |
Satonishiki |
REF/REF |