SNP Information
SNP |
Name |
Pav_sc0000293.1_300016R |
REF |
A |
ALT |
G |
Chromosome |
Name |
PAV_r1.0chr3 |
Position |
710828 |
PAV_r1.0 |
Name |
Pav_sc0000293.1 |
Position |
300016 |
SSR |
motif |
|
Gene |
Name |
|
Annotation |
|
snpEff |
Effect |
intergenic_region |
Impact |
MODIFIER |
Codon |
n.300016A>G |
Amino Acid |
|
PCR |
Forward primer |
TATTGCTGCTGATGGCTGAG |
Reverse primer |
TTGGCAATGAACAGCTGAAG |
Product size |
341 |
Enzymes for CAPS |
MboI |
Exp. fragment size (REF) |
181,160 |
Exp. fragment size (ALT) |
163,18,160 |
References |
|
Germplasm List
Benikirari |
REF/REF |
Benisayaka |
REF/REF |
Benishuho |
ALT/ALT |
Benitemari |
REF/ALT |
Beniyutaka |
REF/ALT |
Nanyo |
REF/ALT |
Satonishiki |
REF/ALT |