SNP Information
SNP |
Name |
Pav_sc0000243.1_129125Y |
REF |
C |
ALT |
T |
Chromosome |
Name |
PAV_r1.0chr3 |
Position |
6858050 |
PAV_r1.0 |
Name |
Pav_sc0000243.1 |
Position |
129125 |
SSR |
motif |
|
Gene |
Name |
|
Annotation |
|
snpEff |
Effect |
intergenic_region |
Impact |
MODIFIER |
Codon |
n.129125C>T |
Amino Acid |
|
PCR |
Forward primer |
CTGCAATCTGAGCACATGAAA |
Reverse primer |
CCTTAAGCACAACCTGGGAC |
Product size |
322 |
Enzymes for CAPS |
DraI |
Exp. fragment size (REF) |
322 |
Exp. fragment size (ALT) |
150,172 |
References |
|
Germplasm List
Benikirari |
-/- |
Benisayaka |
-/- |
Benishuho |
REF/REF |
Benitemari |
REF/REF |
Beniyutaka |
ALT/ALT |
Nanyo |
REF/ALT |
Satonishiki |
REF/REF |