| SNP | Name | Pav_sc0000195.1_239409W |
|---|---|---|
| REF | T | |
| ALT | A | |
| Chromosome | Name | PAV_r1.0chr1 |
| Position | 35740421 | |
| PAV_r1.0 | Name | Pav_sc0000195.1 |
| Position | 239409 | |
| SSR | motif | |
| Gene | Name | Pav_sc0000195.1_g320.1.mk |
| Annotation | PREDICTED: pentatricopeptide repeat-containing protein At1g77405 | |
| snpEff | Effect | missense_variant |
| Impact | MODERATE | |
| Codon | c.1186T>A | |
| Amino Acid | p.Tyr396Asn | |
| PCR | Forward primer | AGGGTTATAGAGGCTCGGGA |
| Reverse primer | TCACAGCGTCAAGTTTCCAC | |
| Product size | 242 | |
| Enzymes for CAPS | ||
| Exp. fragment size (REF) | ||
| Exp. fragment size (ALT) | ||
| References | ||
| Benikirari | REF/REF |
|---|---|
| Benisayaka | REF/REF |
| Benishuho | REF/REF |
| Benitemari | REF/REF |
| Beniyutaka | REF/REF |
| Nanyo | REF/ALT |
| Satonishiki | REF/REF |