| SNP | Name | Pav_sc0000157.1_107224R |
|---|---|---|
| REF | G | |
| ALT | A | |
| Chromosome | Name | PAV_r1.0chr3 |
| Position | 14912910 | |
| PAV_r1.0 | Name | Pav_sc0000157.1 |
| Position | 107224 | |
| SSR | motif | |
| Gene | Name | Pav_sc0000157.1_g180.1.mk |
| Annotation | PREDICTED: pentatricopeptide repeat-containing protein At5g65560-like | |
| snpEff | Effect | synonymous_variant |
| Impact | LOW | |
| Codon | c.315C>T | |
| Amino Acid | p.Ser105Ser | |
| PCR | Forward primer | AAAATCCTCACACGGTCTGC |
| Reverse primer | TCCCAACTCTCTCATCCACC | |
| Product size | 299 | |
| Enzymes for CAPS | ||
| Exp. fragment size (REF) | ||
| Exp. fragment size (ALT) | ||
| References | ||
| Benikirari | REF/REF |
|---|---|
| Benisayaka | ALT/ALT |
| Benishuho | REF/REF |
| Benitemari | REF/ALT |
| Beniyutaka | REF/ALT |
| Nanyo | REF/ALT |
| Satonishiki | REF/ALT |