SNP Information
    
      
      
        
            
              | SNP | Name | Pav_sc0000108.1_105397S | 
	
            
              | REF | G | 
	
            
              | ALT | C | 
	
            
	      | Chromosome | Name | PAV_r1.0chr5 | 
	
            
	      | Position | 3421665 | 
	
            
	      | PAV_r1.0 | Name | Pav_sc0000108.1 | 
	
            
	      | Position | 105397 | 
	
            
	      | SSR | motif |  | 
	
            
	      | Gene | Name |  | 
	
            
	      | Annotation |  | 
	
            
	      | snpEff | Effect | intergenic_region | 
	
            
	      | Impact | MODIFIER | 
	
            
	      | Codon | n.105397G>C | 
	
            
	      | Amino Acid |  | 
	
            
	      | PCR | Forward primer | AGGCGATTAGCACACACTCT | 
	
            
	      | Reverse primer | AAACAATCATTCCAGCCCAG | 
	
            
	      | Product size | 346 | 
	
            
	      | Enzymes for CAPS |  | 
	
            
	      | Exp. fragment size (REF) |  | 
            
	      | Exp. fragment size (ALT) |  | 
	
            
	      | References |  | 
	        
        
        Germplasm List
       
         
    
      | Benikirari | REF/ALT | 
    
      | Benisayaka | ALT/ALT | 
    
      | Benishuho | REF/ALT | 
    
      | Benitemari | REF/ALT | 
    
      | Beniyutaka | ALT/ALT | 
    
      | Nanyo | REF/REF | 
    
      | Satonishiki | REF/ALT |