| SNP | Name | Pav_sc0000086.1_80778R |
|---|---|---|
| REF | A | |
| ALT | G | |
| Chromosome | Name | PAV_r1.0chr4 |
| Position | 7973844 | |
| PAV_r1.0 | Name | Pav_sc0000086.1 |
| Position | 80778 | |
| SSR | motif | |
| Gene | Name | Pav_sc0000086.1_g160.1.mk |
| Annotation | PREDICTED: pentatricopeptide repeat-containing protein At4g19890 | |
| snpEff | Effect | synonymous_variant |
| Impact | LOW | |
| Codon | c.1923A>G | |
| Amino Acid | p.Thr641Thr | |
| PCR | Forward primer | ATGATGGACAAAGGGCTGTC |
| Reverse primer | TCAGCTGCTAGCCAATTCCT | |
| Product size | 334 | |
| Enzymes for CAPS | ||
| Exp. fragment size (REF) | ||
| Exp. fragment size (ALT) | ||
| References | ||
| Benikirari | REF/REF |
|---|---|
| Benisayaka | ALT/ALT |
| Benishuho | REF/ALT |
| Benitemari | REF/REF |
| Beniyutaka | REF/REF |
| Nanyo | REF/ALT |
| Satonishiki | REF/ALT |